FSL

Description

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

Modulefile

fsl

Documentation

FSL Wiki and Overview of FSL tools.

Usage

FSL requires substantial preparation of your environment. In order to run FSL commands, you must load a modulefile followed by sourcing a configuration script.

Here is an example:

#$ -cwd
#$ -l h_rt=01:00:00

module load fsl
source ${FSLDIR}/etc/fslconf/fsl.sh

flirt -version